Publications

2002

Aderem, A. 2002. “How to Eat Something Bigger than Your Head.” Cell 110 (1): 5–8. Cite
Aebersold, R., and B. F. Cravatt. 2002. “Proteomics–Advances, Applications and the Challenges That Remain.” Trends Biotechnol 20 (12 Suppl): S1-2. Cite
Aebersold, R., and J. Watts. 2002. “The Need for National Centers for Proteomics.” Nat Biotechnol 20 (7): 651. Cite
Aitchison, J. D., and M. P. Rout. 2002. “A Tense Time for the Nuclear Envelope.” Cell 108 (3): 301–4. Cite
Aparicio, S., J. Chapman, E. Stupka, N. Putnam, J. M. Chia, P. Dehal, A. Christoffels, et al. 2002. “Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu Rubripes.” Science 297 (5585): 1301–10. Cite
Asbury, C. L., A. H. Diercks, and G. van den Engh. 2002. “Trapping of DNA by Dielectrophoresis.” Electrophoresis 23 (16): 2658–66. Cite
Baliga, N. S., M. Pan, Y. A. Goo, E. C. Yi, D. R. Goodlett, K. Dimitrov, P. Shannon, R. Aebersold, W. V. Ng, and L. Hood. 2002. “Coordinate Regulation of Energy Transduction Modules in Halobacterium Sp. Analyzed by a Global Systems Approach.” Proc Natl Acad Sci U S A 99 (23): 14913–18. Cite
Davidson, E. H., J. P. Rast, P. Oliveri, A. Ransick, C. Calestani, C. H. Yuh, T. Minokawa, et al. 2002. “A Genomic Regulatory Network for Development.” Science 295 (5560): 1669–78. Cite
Davidson, E. H., J. P. Rast, P. Oliveri, A. Ransick, C. Calestani, C. H. Yuh, T. Minokawa, et al. 2002. “A Provisional Regulatory Gene Network for Specification of Endomesoderm in the Sea Urchin Embryo.” Dev Biol 246 (1): 162–90. Cite
Degelman, Douglas, and Nicole Deann Price. 2002. “Tattoos and Ratings of Personal Characteristics.” Psychological Reports 90 (2): 507–14. https://doi.org/10.2466/pr0.2002.90.2.507. Cite
Dramsi, S., M. P. Scheid, A. Maiti, P. Hojabrpour, X. Chen, K. Schubert, D. R. Goodlett, R. Aebersold, and V. Duronio. 2002. “Identification of a Novel Phosphorylation Site, Ser-170, as a Regulator of Bad pro-Apoptotic Activity.” J Biol Chem 277 (8): 6399–6405. Cite
Flory, M. R., T. J. Griffin, D. Martin, and R. Aebersold. 2002. “Advances in Quantitative Proteomics Using Stable Isotope Tags.” Trends Biotechnol 20 (12 Suppl): S23-9. Cite
Foltz, G., A. Madan, and L. Hood. 2002. Cancer Proteomics: Methodologies for the Selection of Immunotherapy Targets. Principles and Practice of Biologic Therapy of Cancer Updates, Third Edition. New York: Lippincott Williams & Wilkins, A Wolters Kluwer Company. Cite
Futter, N. Wade, H. Varmus, E. Green, C. Venter, L. Hood, R. Bazell, et al. 2002. “After the Genome: Where Should We Go?” In The Genomic Revolution: Unveiling the Unity of Life, 64–73. Joseph Henry Press, Washington, D.C. with the American Museum of Natural History. Cite
Gan, T. I., L. Rowen, R. Nesbitt, B. A. Roe, H. Wu, P. Hu, Z. Yao, U. J. Kim, T. O’Sickey, and M. Bina. 2002. “Genomic Organization of Human TCF12 Gene and Spliced MRNA Variants Producing Isoforms of Transcription Factor HTF4.” Cytogenet Genome Res 98 (4): 245–48. Cite
Gjertsen, B. T., A. M. Oyan, B. Marzolf, R. Hovland, G. Gausdal, S. O. Doskeland, K. Dimitrov, et al. 2002. “Analysis of Acute Myelogenous Leukemia: Preparation of Samples for Genomic and Proteomic Analyses.” J Hematother Stem Cell Res 11 (3): 469–81. Cite
Graham, J., W. A. Hagopian, I. Kockum, L. S. Li, C. B. Sanjeevi, R. M. Lowe, J. B. Schaefer, et al. 2002. “Genetic Effects on Age-Dependent Onset and Islet Cell Autoantibody Markers in Type 1 Diabetes.” Diabetes 51 (5): 1346–55. Cite
Griffin, T. J., S. P. Gygi, T. Ideker, B. Rist, J. Eng, L. Hood, and R. Aebersold. 2002. “Complementary Profiling of Gene Expression at the Transcriptome and Proteome Levels in Saccharomyces Cerevisiae.” Mol Cell Proteomics 1 (4): 323–33. Cite
Guo, Z., M. S. Gatterman, L. Hood, J. A. Hansen, and E. W. Petersdorf. 2002. “Oligonucleotide Arrays for High-Throughput SNPs Detection in the MHC Class I Genes: HLA-B as a Model System.” Genome Res 12 (3): 447–57. Cite
Gygi, S. P., B. Rist, T. J. Griffin, J. Eng, and R. Aebersold. 2002. “Proteome Analysis of Low-Abundance Proteins Using Multidimensional Chromatography and Isotope-Coded Affinity Tags.” J Proteome Res 1 (1): 47–54. Cite
Hamerman, J. A., F. Hayashi, L. A. Schroeder, S. P. Gygi, A. L. Haas, L. Hampson, P. Coughlin, R. Aebersold, and A. Aderem. 2002. “Serpin 2a Is Induced in Activated Macrophages and Conjugates to a Ubiquitin Homolog.” J Immunol 168 (5): 2415–23. Cite
Hawn, T. R., A. Ozinsky, D. M. Underhill, F. S. Buckner, S. Akira, and A. Aderem. 2002. “Leishmania Major Activates IL-1 Alpha Expression in Macrophages through a MyD88-Dependent Pathway.” Microbes Infect 4 (8): 763–71. Cite
Hood, L. 2002. “The InTouch Interview with Biotech Man Leroy Hood, MD, PhD. Interview by Peter Tarr.” InTouch 4 (3): 28–32. Cite
Hood, L. 2002. “A Personal View of Molecular Technology and How It Has Changed Biology.” J Proteome Res 1 (5): 399–409. Cite
James, E. A., S. P. Gygi, M. L. Adams, R. H. Pierce, N. Fausto, R. Aebersold, S. D. Nelson, and S. A. Bruschi. 2002. “Mitochondrial Aconitase Modification, Functional Inhibition, and Evidence for a Supramolecular Complex of the TCA Cycle by the Renal Toxicant S-(1,1,2,2-Tetrafluoroethyl)-L-Cysteine.” Biochemistry 41 (21): 6789–97. Cite
Kabak, S., B. J. Skaggs, M. R. Gold, M. Affolter, K. L. West, M. S. Foster, K. Siemasko, A. C. Chan, R. Aebersold, and M. R. Clark. 2002. “The Direct Recruitment of BLNK to Immunoglobulin Alpha Couples the B-Cell Antigen Receptor to Distal Signaling Pathways.” Mol Cell Biol 22 (8): 2524–35. Cite
Keller, A., S. Purvine, A. I. Nesvizhskii, S. Stolyar, D. R. Goodlett, and E. Kolker. 2002. “Experimental Protein Mixture for Validating Tandem Mass Spectral Analysis.” OMICS 6 (2): 207–12. Cite
Keller, A., A. I. Nesvizhskii, E. Kolker, and R. Aebersold. 2002. “Empirical Statistical Model to Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search.” Anal Chem 74 (20): 5383–92. Cite
Kumanovics, A., A. Madan, S. Qin, L. Rowen, L. Hood, and K. Fischer Lindahl. 2002. “QUOD ERAT FACIENDUM: Sequence Analysis of the H2-D and H2-Q Regions of 129/SvJ Mice.” Immunogenetics 54 (7): 479–89. Cite
Lane, R. P., J. C. Roach, I. Lee, C. Boysen, A. Smit, B. J. Trask, and L. Hood. 2002. “Genomic Analysis of the Olfactory Receptor Region of the Mouse and Human T-Cell Receptor Alpha/Delta Loci.” Genome Research 12 (1): 81–87. Cite
Lane, R. P., T. Cutforth, R. Axel, L. Hood, and B. J. Trask. 2002. “Sequence Analysis of Mouse Vomeronasal Receptor Gene Clusters Reveals Common Promoter Motifs and a History of Recent Expansion.” Proc Natl Acad Sci U S A 99 (1): 291–96. Cite
Lee, H., T. J. Griffin, S. P. Gygi, B. Rist, and R. Aebersold. 2002. “Development of a Multiplexed Microcapillary Liquid Chromatography System for High-Throughput Proteome Analysis.” Anal Chem 74 (17): 4353–60. Cite
Leong, K. G., X. Hu, L. Li, M. Noseda, B. Larrivee, C. Hull, L. Hood, F. Wong, and A. Karsan. 2002. “Activated Notch4 Inhibits Angiogenesis: Role of Beta 1-Integrin Activation.” Mol Cell Biol 22 (8): 2830–41. Cite
Leslie, D. M., B. Grill, M. P. Rout, R. W. Wozniak, and J. D. Aitchison. 2002. “Kap121p-Mediated Nuclear Import Is Required for Mating and Cellular Differentiation in Yeast.” Mol Cell Biol 22 (8): 2544–55. Cite
Liu, A. Y., P. S. Nelson, G. van den Engh, and L. Hood. 2002. “Human Prostate Epithelial Cell-Type CDNA Libraries and Prostate Expression Patterns.” Prostate 50 (2): 92–103. Cite
Lusk, C. P., T. Makhnevych, M. Marelli, J. D. Aitchison, and R. W. Wozniak. 2002. “Karyopherins in Nuclear Pore Biogenesis: A Role for Kap121p in the Assembly of Nup53p into Nuclear Pore Complexes.” J Cell Biol 159 (2): 267–78. Cite
Marotti, Jr, R. Newitt, Y. Wang, R. Aebersold, and H. G. Dohlman. 2002. “Direct Identification of a G Protein Ubiquitination Site by Mass Spectrometry.” Biochemistry 41 (16): 5067–74. Cite
Mouse Genome Sequencing, Consortium, R. H. Waterston, K. Lindblad-Toh, E. Birney, J. Rogers, J. F. Abril, P. Agarwal, et al. 2002. “Initial Sequencing and Comparative Analysis of the Mouse Genome.” Nature 420 (6915): 520–62. Cite
Nelson, P. S., N. Clegg, H. Arnold, C. Ferguson, M. Bonham, J. White, L. Hood, and B. Lin. 2002. “The Program of Androgen-Responsive Genes in Neoplastic Prostate Epithelium.” Proc Natl Acad Sci U S A 99 (18): 11890–95. Cite
Papin, Jason A., Nathan D. Price, and Bernhard O. Palsson. 2002. “Extreme Pathway Lengths and Reaction Participation in Genome-Scale Metabolic Networks.” Genome Research 12 (12): 1889–1900. https://doi.org/10.1101/gr.327702. Cite
Papin, Jason A., Nathan D. Price, Jeremy S. Edwards, and Bernhard O. Palsson B. 2002. “The Genome-Scale Metabolic Extreme Pathway Structure in Haemophilus Influenzae Shows Significant Network Redundancy.” Journal of Theoretical Biology 215 (1). https://doi.org/10.1006/jtbi.2001.2499. Cite
Park, I. K., Y. He, F. Lin, O. D. Laerum, Q. Tian, R. Bumgarner, C. A. Klug, et al. 2002. “Differential Gene Expression Profiling of Adult Murine Hematopoietic Stem Cells.” Blood 99 (2): 488–98. Cite
Price, N. D., J. A. Papin, and B. O. Palsson. 2002. “Determination of Redundancy and Systems Properties of the Metabolic Network of Helicobacter Pylori Using Genome-Scale Extreme Pathway Analysis.” Genome Research 12 (5): 760–69. Cite
Price, Nathan D., Iman Famili, Daniel A. Beard, and Bernhard O. Palsson. 2002. “Extreme Pathways and Kirchhoff’s Second Law.” Biophysical Journal 83 (5): 2879–82. https://doi.org/10.1016/S0006-3495(02)75297-1. Cite
Rabilloud, T., M. Heller, F. Gasnier, S. Luche, C. Rey, R. Aebersold, M. Benahmed, P. Louisot, and J. Lunardi. 2002. “Proteomics Analysis of Cellular Response to Oxidative Stress. Evidence for in Vivo Overoxidation of Peroxiredoxins at Their Active Site.” J Biol Chem 277 (22): 19396–401. Cite
Ravasi, T., C. Wells, A. Forest, D. M. Underhill, B. J. Wainwright, A. Aderem, S. Grimmond, and D. A. Hume. 2002. “Generation of Diversity in the Innate Immune System: Macrophage Heterogeneity Arises from Gene-Autonomous Transcriptional Probability of Individual Inducible Genes.” J Immunol 168 (1): 44–50. Cite
Rowen, L., J. Young, B. Birditt, A. Kaur, A. Madan, D. L. Philipps, S. Qin, et al. 2002. “Analysis of the Human Neurexin Genes: Alternative Splicing and the Generation of Protein Diversity.” Genomics 79 (4): 587–97. Cite
Shiio, Y., S. Donohoe, E. C. Yi, D. R. Goodlett, R. Aebersold, and R. N. Eisenman. 2002. “Quantitative Proteomic Analysis of Myc Oncoprotein Function.” EMBO J 21 (19): 5088–96. Cite
Smith, K. D., and A. Ozinsky. 2002. “Toll-like Receptor-5 and the Innate Immune Response to Bacterial Flagellin.” Curr Top Microbiol Immunol 270: 93–108. Cite
Smith, J. J., M. Marelli, R. H. Christmas, F. J. Vizeacoumar, D. J. Dilworth, T. Ideker, T. Galitski, K. Dimitrov, R. A. Rachubinski, and J. D. Aitchison. 2002. “Transcriptome Profiling to Identify Genes Involved in Peroxisome Assembly and Function.” J Cell Biol 158 (2): 259–71. Cite