Publications

2001

Aderem, A. 2001. “Role of Toll-like Receptors in Inflammatory Response in Macrophages.” Crit Care Med 29 (7 Suppl): S16-8. Cite
Aderem, A., and L. Hood. 2001. “Immunology in the Post-Genomic Era.” Nat Immunol 2 (5): 373–75. Cite
Aebersold, R., and D. R. Goodlett. 2001. “Mass Spectrometry in Proteomics.” Chem Rev 101 (2): 269–95. Cite
Aebersold, R., i SP Gyg, T. Griffin, D. K. Han, and M. Yelle. 2001. “The Isotope-Coded Affinity Tag Reagent Method for Quantitative Proteomics.” AGPT 1 (1): 22–27. Cite
Anderson, J. P., A. G. Rodrigo, G. H. Learn, Y. Wang, H. Weinstock, M. L. Kalish, K. E. Robbins, L. Hood, and J. I. Mullins. 2001. “Substitution Model of Sequence Evolution for the Human Immunodeficiency Virus Type 1 Subtype B Gp120 Gene over the C2-V5 Region.” J Mol Evol 53 (1): 55–62. Cite
Baliga, N. S. 2001. “Promoter Analysis by Saturation Mutagenesis.” Biol Proced Online 3 (December): 64–69. Cite
Baliga, N. S., S. P. Kennedy, W. V. Ng, L. Hood, and S. DasSarma. 2001. “Genomic and Genetic Dissection of an Archaeal Regulon.” Proc Natl Acad Sci U S A 98 (5): 2521-5. Cite
Bruls, T., G. Gyapay, J. L. Petit, F. Artiguenave, V. Vico, S. Qin, A. M. Tin-Wollam, et al. 2001. “A Physical Map of Human Chromosome 14.” Nature 409 (6822): 947–48. Cite
Chen, F., L. Rowen, L. Hood, and E. V. Rothenberg. 2001. “Differential Transcriptional Regulation of Individual TCR V Beta Segments before Gene Rearrangement.” J Immunol 166 (3): 1771–80. Cite
Cheung, V. G., N. Nowak, W. Jang, I. R. Kirsch, S. Zhao, X. N. Chen, T. S. Furey, et al. 2001. “Integration of Cytogenetic Landmarks into the Draft Sequence of the Human Genome.” Nature 409 (6822): 953–58. Cite
DasSarma, S., S. P. Kennedy, B. Berquist, W. Victor Ng, N. S. Baliga, J. L. Spudich, M. P. Krebs, J. A. Eisen, C. H. Johnson, and L. Hood. 2001. “Genomic Perspective on the Photobiology of Halobacterium Species NRC-1, a Phototrophic, Phototactic, and UV-Tolerant Haloarchaeon.” Photosynth Res 70 (1): 3–17. Cite
Dilworth, D. J., A. Suprapto, J. C. Padovan, B. T. Chait, R. W. Wozniak, M. P. Rout, and J. D. Aitchison. 2001. “Nup2p Dynamically Associates with the Distal Regions of the Yeast Nuclear Pore Complex.” J Cell Biol 153 (7): 1465–78. Cite
Gingras, A. C., B. Raught, S. P. Gygi, A. Niedzwiecka, M. Miron, S. K. Burley, R. D. Polakiewicz, A. Wyslouch-Cieszynska, R. Aebersold, and N. Sonenberg. 2001. “Hierarchical Phosphorylation of the Translation Inhibitor 4E-BP1.” Genes Dev 15 (21): 2852–64. Cite
Glusman, G., L. Rowen, I. Lee, C. Boysen, J. Roach, A. Smit, K. Wang, B. F. Koop, and L. Hood. 2001. “Comparative Genomics of the Human and Mouse T Cell Receptor Loci.” Immunity 15 (3): 337–49. Cite
Goode, E. L., J. L. Stanford, M. A. Peters, M. Janer, M. Gibbs, S. Kolb, M. D. Badzioch, L. Hood, E. A. Ostrander, and G. P. Jarvik. 2001. “Clinical Characteristics of Prostate Cancer in an Analysis of Linkage to Four Putative Susceptibility Loci.” Clin Cancer Res 7 (9): 2739–49. Cite
Goodlett, D. R., A. Keller, J. Watts, R. Newitt, E. C. Yi, S. Purvine, J. K. Eng, P. von Haller, R. Aebersold, and E. Kolker. 2001. “Differential Stable Isotope Labeling of Peptides for Quantitation and de Novo Sequence Derivation.” Rapid Commun Mass Spectrom 15 (14): 1214–21. Cite
Griffin, T. J., and R. Aebersold. 2001. “Advances in Proteome Analysis by Mass Spectrometry.” J Biol Chem 276 (49): 45497–500. Cite
Griffin, T. J., D. K. Han, S. P. Gygi, B. Rist, H. Lee, R. Aebersold, and K. C. Parker. 2001. “Toward a High-Throughput Approach to Quantitative Proteomic Analysis: Expression-Dependent Protein Identification by Mass Spectrometry.” J Am Soc Mass Spectrom 12 (12): 1238–46. Cite
Griffin, T. J., S. P. Gygi, B. Rist, R. Aebersold, A. Loboda, A. Jilkine, W. Ens, and K. G. Standing. 2001. “Quantitative Proteomic Analysis Using a MALDI Quadrupole Time-of-Flight Mass Spectrometer.” Anal Chem 73 (5): 978–86. Cite
Hajjar, A. M., D. S. O’Mahony, A. Ozinsky, D. M. Underhill, A. Aderem, S. J. Klebanoff, and C. B. Wilson. 2001. “Cutting Edge: Functional Interactions between Toll-like Receptor (TLR) 2 and TLR1 or TLR6 in Response to Phenol-Soluble Modulin.” J Immunol 166 (1): 15–19. Cite
Hamerman, J. A., and A. Aderem. 2001. “Functional Transitions in Macrophages during in Vivo Infection with Mycobacterium Bovis Bacillus Calmette-Guerin.” J Immunol 167 (4): 2227–33. Cite
Han, D. K., J. Eng, H. Zhou, and R. Aebersold. 2001. “Quantitative Profiling of Differentiation-Induced Microsomal Proteins Using Isotope-Coded Affinity Tags and Mass Spectrometry.” Nat Biotechnol 19 (10): 946–51. Cite
Han, M. H., D. K. Han, R. Aebersold, and J. A. Glomset. 2001. “Effects of Protein Kinase CK2, Extracellular Signal-Regulated Kinase 2, and Protein Phosphatase 2A on a Phosphatidic Acid-Preferring Phospholipase A1.” J Biol Chem 276 (29): 27698–708. Cite
Hass, G. M., J. L. Meyer, R. A. Newitt, T. Labuda, L. Brown, R. Aebersold, and R. L. Vessella. 2001. “Identification of the Target of Monoclonal Antibody A6H as Dipeptidyl Peptidase IV/CD26 by LC MS\MS.” Hybridoma 20 (4): 231–36. Cite
Hayashi, F., K. D. Smith, A. Ozinsky, T. R. Hawn, E. C. Yi, D. R. Goodlett, J. K. Eng, S. Akira, D. M. Underhill, and A. Aderem. 2001. “The Innate Immune Response to Bacterial Flagellin Is Mediated by Toll-like Receptor 5.” Nature 410 (6832): 1099–1103. Cite
Heller, M., J. Watts, and R. Aebersold. 2001. “CD28 Stimulation Regulates Its Association with N-Ethylmaleimide-Sensitive Fusion Protein and Other Proteins Involved in Vesicle Sorting.” Proteomics 1 (1): 70–78. Cite
Hood, L. 2001. “Melanoma Techniques and Protocols: Molecular Diagnosis, Treatment, and Monitoring.” In Methods in Molecular Medicine, 61:Forward by Hood, L. Totowa, NJ: Humana Pr Inc. Cite
Hood, L. 2001. “Computing Life: The Challenge Ahead.” IEEE Eng Med Biol Mag 20 (4): 20. Cite
Hood, L. 2001. “Deciphering Heredity.” In The Alfred Deakin Lectures: Ideas for the Future of a Civil Society, 164–76. Sydney, Australia: Australian Broadcasting Corporation. Cite
Hume, D. A., D. M. Underhill, M. J. Sweet, A. Ozinsky, F. Y. Liew, and A. Aderem. 2001. “Macrophages Exposed Continuously to Lipopolysaccharide and Other Agonists That Act via Toll-like Receptors Exhibit a Sustained and Additive Activation State.” BMC Immunol 2: 11. Cite
Ideker, T., T. Galitski, and L. Hood. 2001. “A New Approach to Decoding Life: Systems Biology.” Annu Rev Genomics Hum Genet 2: 343–72. Cite
Ideker, T., V. Thorsson, J. Ranish, R. Christmas, J. Buhler, J. K. Eng, R. Bumgarner, D. R. Goodlett, R. Aebersold, and L. Hood. 2001. “Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network.” Science 292 (5518): 929–34. Cite
Iouk, T. L., J. D. Aitchison, S. Maguire, and R. W. Wozniak. 2001. “Rrb1p, a Yeast Nuclear WD-Repeat Protein Involved in the Regulation of Ribosome Biosynthesis.” Mol Cell Biol 21 (4): 1260–71. Cite
Kennedy, S. P., W. V. Ng, S. L. Salzberg, L. Hood, and S. DasSarma. 2001. “Understanding the Adaptation of Halobacterium Species NRC-1 to Its Extreme Environment through Computational Analysis of Its Genome Sequence.” Genome Res 11 (10): 1641–50. Cite
Lander, E. S., L. M. Linton, B. Birren, C. Nusbaum, M. C. Zody, J. Baldwin, K. Devon, et al. 2001. “Initial Sequencing and Analysis of the Human Genome.” Nature 409 (6822): 860–921. Cite
Lane, R. P., T. Cutforth, J. Young, M. Athanasiou, C. Friedman, L. Rowen, G. Evans, R. Axel, L. Hood, and B. J. Trask. 2001. “Genomic Analysis of Orthologous Mouse and Human Olfactory Receptor Loci.” Proc Natl Acad Sci U S A 98 (13): 7390–95. Cite
Lin, B., J. T. White, C. Ferguson, S. Wang, R. Vessella, R. Bumgarner, L. D. True, L. Hood, and P. S. Nelson. 2001. “Prostate Short-Chain Dehydrogenase Reductase 1 (PSDR1): A New Member of the Short-Chain Steroid Dehydrogenase/Reductase Family Highly Expressed in Normal and Neoplastic Prostate Epithelium.” Cancer Res 61 (4): 1611–18. Cite
Liu, Y., J. Ranish, R. Aebersold, and S. Hahn. 2001. “Yeast Nuclear Extract Contains Two Major Forms of RNA Polymerase II Mediator Complexes.” J Biol Chem 276 (10): 7169–75. Cite
Marelli, M., D. J. Dilworth, R. W. Wozniak, and J. D. Aitchison. 2001. “The Dynamics of Karyopherin-Mediated Nuclear Transport.” Biochem Cell Biol 79 (5): 603–12. Cite
Marelli, M., C. P. Lusk, H. Chan, J. D. Aitchison, and R. W. Wozniak. 2001. “A Link between the Synthesis of Nucleoporins and the Biogenesis of the Nuclear Envelope.” J Cell Biol 153 (4): 709–24. Cite
Martin, D. B., and P. S. Nelson. 2001. “From Genomics to Proteomics: Techniques and Applications in Cancer Research.” Trends Cell Biol 11 (11): S60-5. Cite
Mayer, M. L., S. P. Gygi, R. Aebersold, and P. Hieter. 2001. “Identification of RFC(Ctf18p, Ctf8p, Dcc1p): An Alternative RFC Complex Required for Sister Chromatid Cohesion in S. Cerevisiae.” Mol Cell 7 (5): 959–70. Cite
McPherson, J. D., M. Marra, L. Hillier, R. H. Waterston, A. Chinwalla, J. Wallis, M. Sekhon, et al. 2001. “A Physical Map of the Human Genome.” Nature 409 (6822): 934–41. Cite
Meyer, A. L., J. Benson, F. Song, N. Javed, I. E. Gienapp, J. Goverman, T. A. Brabb, L. Hood, and C. C. Whitacre. 2001. “Rapid Depletion of Peripheral Antigen-Specific T Cells in TCR-Transgenic Mice after Oral Administration of Myelin Basic Protein.” J Immunol 166 (9): 5773–81. Cite
Moore, R. C., P. Mastrangelo, E. Bouzamondo, C. Heinrich, G. Legname, S. B. Prusiner, L. Hood, D. Westaway, S. J. Dearmond, and P. Tremblay. 2001. “Doppel-Induced Cerebellar Degeneration in Transgenic Mice.” Proc Natl Acad Sci U S A 98 (26): 15288–93. Cite
Muthalif, M. M., Y. Hefner, S. Canaan, J. Harper, H. Zhou, J. H. Parmentier, R. Aebersold, M. H. Gelb, and K. U. Malik. 2001. “Functional Interaction of Calcium-/Calmodulin-Dependent Protein Kinase II and Cytosolic Phospholipase A(2).” J Biol Chem 276 (43): 39653–60. Cite
Nirodi, C., S. NagDas, S. P. Gygi, G. Olson, R. Aebersold, and A. Richmond. 2001. “A Role for Poly(ADP-Ribose) Polymerase in the Transcriptional Regulation of the Melanoma Growth Stimulatory Activity (CXCL1) Gene Expression.” J Biol Chem 276 (12): 9366–74. Cite
Panigrahi, A. K., S. P. Gygi, N. L. Ernst, Jr Igo, S. S. Palazzo, A. Schnaufer, D. S. Weston, et al. 2001. “Association of Two Novel Proteins, TbMP52 and TbMP48, with the Trypanosoma Brucei RNA Editing Complex.” Mol Cell Biol 21 (2): 380–89. Cite
Panigrahi, A. K., A. Schnaufer, N. Carmean, Jr Igo, S. P. Gygi, N. L. Ernst, S. S. Palazzo, et al. 2001. “Four Related Proteins of the Trypanosoma Brucei RNA Editing Complex.” Mol Cell Biol 21 (20): 6833–40. Cite
Pariyarath, R., H. Wang, J. D. Aitchison, H. N. Ginsberg, W. J. Welch, A. E. Johnson, and E. A. Fisher. 2001. “Co-Translational Interactions of Apoprotein B with the Ribosome and Translocon during Lipoprotein Assembly or Targeting to the Proteasome.” J Biol Chem 276 (1): 541–50. Cite