Publications

2000

Aderem, A., and D. A. Hume. 2000. “How Do You See CG?” Cell 103 (7): 993–96. Cite
Aderem, A., and R. J. Ulevitch. 2000. “Toll-like Receptors in the Induction of the Innate Immune Response.” Nature 406 (6797): 782–87. Cite
Aebersold, R., L. E. Hood, and J. Watts. 2000. “Equipping Scientists for the New Biology.” Nat Biotechnol 18 (4): 359. Cite
Aitchison, J. D., and M. P. Rout. 2000. “The Road to Ribosomes. Filling Potholes in the Export Pathway.” J Cell Biol 151 (5): F23-6. Cite
Allen, E. E., and L. Hood. 2000. “Biotechnology, Inquiry, and Public Education.” Trends Biotechnol 18 (8): 329–30. Cite
Anderson, J. P., A. G. Rodrigo, G. H. Learn, A. Madan, C. Delahunty, M. Coon, M. Girard, S. Osmanov, L. Hood, and J. I. Mullins. 2000. “Testing the Hypothesis of a Recombinant Origin of Human Immunodeficiency Virus Type 1 Subtype E.” J Virol 74 (22): 10752–65. Cite
Baliga, N. S., Y. A. Goo, W. V. Ng, L. Hood, C. J. Daniels, and S. DasSarma. 2000. “Is Gene Expression in Halobacterium NRC-1 Regulated by Multiple TBP and TFB Transcription Factors?” Mol Microbiol 36 (5): 1184–85. Cite
Brewster, J. L., S. L. Martin, J. Toms, D. Goss, K. Wang, K. Zachrone, A. Davis, G. Carlson, L. Hood, and J. D. Coffin. 2000. “Deletion of Dad1 in Mice Induces an Apoptosis-Associated Embryonic Death.” Genesis 26 (4): 271–78. Cite
Cameron, R. A., G. Mahairas, J. P. Rast, P. Martinez, T. R. Biondi, S. Swartzell, J. C. Wallace, et al. 2000. “A Sea Urchin Genome Project: Sequence Scan, Virtual Map, and Additional Resources.” Proc Natl Acad Sci U S A 97 (17): 9514–18. Cite
Chaudhary, P. M., M. T. Eby, A. Jasmin, A. Kumar, L. Liu, and L. Hood. 2000. “Activation of the NF-KappaB Pathway by Caspase 8 and Its Homologs.” Oncogene 19 (39): 4451–60. Cite
Deng, Y., A. Madan, A. B. Banta, C. Friedman, B. J. Trask, L. Hood, and L. Li. 2000. “Characterization, Chromosomal Localization, and the Complete 30-Kb DNA Sequence of the Human Jagged2 (JAG2) Gene.” Genomics 63 (1): 133–38. Cite
Ebrini, I., D. Agnello, I. Miller, P. Villa, M. Fratelli, P. Ghezzi, M. Gemeiner, J. Chan, R. Aebersold, and E. Gianazza. 2000. “Proteins of Rat Serum V: Adjuvant Arthritis and Its Modulation by Nonsteroidal Anti-Inflammatory Drugs.” Electrophoresis 21 (11): 2170–79. Cite
Gan, L., I. Lee, R. Smith, R. Argonza-Barrett, H. Lei, J. McCuaig, P. Moss, B. Paeper, and K. Wang. 2000. “Sequencing and Expression Analysis of the Serine Protease Gene Cluster Located in Chromosome 19q13 Region.” Gene 257 (1): 119–30. Cite
Gibbs, M., J. L. Stanford, G. P. Jarvik, M. Janer, M. Badzioch, M. A. Peters, E. L. Goode, et al. 2000. “A Genomic Scan of Families with Prostate Cancer Identifies Multiple Regions of Interest.” Am J Hum Genet 67 (1): 100–109. Cite
Gold, E. S., N. S. Morrissette, D. M. Underhill, J. Guo, M. Bassetti, and A. Aderem. 2000. “Amphiphysin IIm, a Novel Amphiphysin II Isoform, Is Required for Macrophage Phagocytosis.” Immunity 12 (3): 285–92. Cite
Goode, E. L., J. L. Stanford, L. Chakrabarti, M. Gibbs, S. Kolb, R. A. McIndoe, V. A. Buckley, et al. 2000. “Linkage Analysis of 150 High-Risk Prostate Cancer Families at 1q24-25.” Genet Epidemiol 18 (3): 251–75. Cite
Goodlett, D. R., J. E. Bruce, G. A. Anderson, B. Rist, L. Pasa-Tolic, O. Fiehn, R. D. Smith, and R. Aebersold. 2000. “Protein Identification with a Single Accurate Mass of a Cysteine-Containing Peptide and Constrained Database Searching.” Anal Chem 72 (6): 1112–18. Cite
Goodlett, D. R., R. Aebersold, and J. Watts. 2000. “Quantitative in Vitro Kinase Reaction as a Guide for Phosphoprotein Analysis by Mass Spectrometry.” Rapid Commun Mass Spectrom 14 (5): 344–48. Cite
Gregory, K. E., J. T. Oxford, Y. Chen, J. E. Gambee, S. P. Gygi, R. Aebersold, P. J. Neame, D. E. Mechling, H. P. Bachinger, and N. P. Morris. 2000. “Structural Organization of Distinct Domains within the Non-Collagenous N-Terminal Region of Collagen Type XI.” J Biol Chem 275 (15): 11498–506. Cite
Gygi, S. P., and R. Aebersold. 2000. “Using Mass Spectrometry for Quantitative Proteomics.” Trends in Biotechnology 18 (Supp. 1) (July): 31–36. Cite
Gygi, S. P., and R. Aebersold. 2000. “Mass Spectrometry and Proteomics.” Curr Opin Chem Biol 4 (5): 489–94. Cite
Gygi, S. P., B. Rist, and R. Aebersold. 2000. “Measuring Gene Expression by Quantitative Proteome Analysis.” Curr Opin Biotechnol 11 (4): 396–401. Cite
Gygi, S. P., G. L. Corthals, Y. Zhang, Y. Rochon, and R. Aebersold. 2000. “Evaluation of Two-Dimensional Gel Electrophoresis-Based Proteome Analysis Technology.” Proc Natl Acad Sci U S A 97 (17): 9390–95. Cite
Haynes, P. A., and R. Aebersold. 2000. “Simultaneous Detection and Identification of O-GlcNAc-Modified Glycoproteins Using Liquid Chromatography-Tandem Mass Spectrometry.” Anal Chem 72 (21): 5402–10. Cite
Heller, M., D. R. Goodlett, J. Watts, and R. Aebersold. 2000. “A Comprehensive Characterization of the T-Cell Antigen Receptor Complex Composition by Microcapillary Liquid Chromatography-Tandem Mass Spectrometry.” Electrophoresis 21 (11): 2180–95. Cite
Hood, L. 2000. “The Human Genome Project–Launch Pad for Human Genetic Engineering.” In Engineering the Human Germline (1st Edition), edited by J. Campbell, 17–24. New York: Oxford University Press. Cite
Ideker, T., V. Thorsson, A. F. Siegel, and L. E. Hood. 2000. “Testing for Differentially-Expressed Genes by Maximum-Likelihood Analysis of Microarray Data.” J Comput Biol 7 (6): 805–17. Cite
Ideker, T. E., V. Thorsson, and R. M. Karp. 2000. “Discovery of Regulatory Interactions through Perturbation: Inference and Experimental Design.” Pac Symp Biocomput, 305–16. Cite
Katze, M. G., B. Kwieciszewski, D. R. Goodlett, C. M. Blakely, P. Neddermann, S. L. Tan, and R. Aebersold. 2000. “Ser(2194) Is a Highly Conserved Major Phosphorylation Site of the Hepatitis C Virus Nonstructural Protein NS5A.” Virology 278 (2): 501–13. Cite
Liao, D. F., Z. G. Jin, A. S. Baas, G. Daum, S. P. Gygi, R. Aebersold, and B. C. Berk. 2000. “Purification and Identification of Secreted Oxidative Stress-Induced Factors from Vascular Smooth Muscle Cells.” J Biol Chem 275 (1): 189–96. Cite
Lin, B., J. T. White, C. Ferguson, R. Bumgarner, C. Friedman, B. Trask, W. Ellis, P. Lange, L. Hood, and P. S. Nelson. 2000. “PART-1: A Novel Human Prostate-Specific, Androgen-Regulated Gene That Maps to Chromosome 5q12.” Cancer Res 60 (4): 858–63. Cite
Livak, F., D. B. Burtrum, L. Rowen, D. G. Schatz, and H. T. Petrie. 2000. “Genetic Modulation of T Cell Receptor Gene Segment Usage during Somatic Recombination.” J Exp Med 192 (8): 1191–96. Cite
Mikheev, A. M., S. A. Mikheev, Y. Zhang, R. Aebersold, and H. Zarbl. 2000. “CArG Binding Factor A (CBF-A) Is Involved in Transcriptional Regulation of the Rat Ha-Ras Promoter.” Nucleic Acids Res 28 (19): 3762–70. Cite
Morrison, D. L., A. Yee, H. B. Paddon, D. Vilimek, R. Aebersold, and S. L. Pelech. 2000. “Regulation of the Meiosis-Inhibited Protein Kinase, a P38(MAPK) Isoform, during Meiosis and Following Fertilization of Seastar Oocytes.” J Biol Chem 275 (44): 34236–44. Cite
Nelson, P. S., N. Clegg, B. Eroglu, V. Hawkins, R. Bumgarner, T. Smith, and L. Hood. 2000. “The Prostate Expression Database (PEDB): Status and Enhancements in 2000.” Nucleic Acids Res 28 (1): 212–13. Cite
Nelson, P. S., D. Han, Y. Rochon, G. L. Corthals, B. Lin, A. Monson, V. Nguyen, et al. 2000. “Comprehensive Analyses of Prostate Gene Expression: Convergence of Expressed Sequence Tag Databases, Transcript Profiling and Proteomics.” Electrophoresis 21 (9): 1823–31. Cite
Ng, W. V., S. P. Kennedy, G. G. Mahairas, B. Berquist, M. Pan, H. D. Shukla, S. R. Lasky, et al. 2000. “Genome Sequence of Halobacterium Species NRC-1.” Proc Natl Acad Sci U S A 97 (22): 12176–81. Cite
Ostrowski, J., D. S. Schullery, O. N. Denisenko, Y. Higaki, J. Watts, R. Aebersold, L. Stempka, M. Gschwendt, and K. Bomsztyk. 2000. “Role of Tyrosine Phosphorylation in the Regulation of the Interaction of Heterogenous Nuclear Ribonucleoprotein K Protein with Its Protein and RNA Partners.” J Biol Chem 275 (5): 3619–28. Cite
Ozinsky, A., D. M. Underhill, J. D. Fontenot, A. M. Hajjar, K. D. Smith, C. B. Wilson, L. Schroeder, and A. Aderem. 2000. “The Repertoire for Pattern Recognition of Pathogens by the Innate Immune System Is Defined by Cooperation between Toll-like Receptors.” Proc Natl Acad Sci U S A 97 (25): 13766–71. Cite
Rampazzo, A., F. Pivotto, G. Occhi, N. Tiso, S. Bortoluzzi, L. Rowen, L. Hood, A. Nava, and G. A. Danieli. 2000. “Characterization of C14orf4, a Novel Intronless Human Gene Containing a Polyglutamine Repeat, Mapped to the ARVD1 Critical Region.” Biochem Biophys Res Commun 278 (3): 766–74. Cite
Raught, B., A. C. Gingras, S. P. Gygi, H. Imataka, S. Morino, A. Gradi, R. Aebersold, and N. Sonenberg. 2000. “Serum-Stimulated, Rapamycin-Sensitive Phosphorylation Sites in the Eukaryotic Translation Initiation Factor 4GI.” EMBO J 19 (3): 434–44. Cite
Roach, J., V. Thorsson, and A. F. Siegel. 2000. “Parking Strategies for Genome Sequencing.” Genome Res 10 (7): 1020–30. Cite
Rowen, L., G. K. Wong, R. P. Lane, and L. Hood. 2000. “Intellectual Property. Publication Rights in the Era of Open Data Release Policies.” Science 289 (5486): 1881. Cite
Siegel, A. F., G. van den Engh, L. Hood, B. Trask, and J. Roach. 2000. “Modeling the Feasibility of Whole Genome Shotgun Sequencing Using a Pairwise End Strategy.” Genomics 68 (3): 237–46. Cite
Timperman, A. T., and R. Aebersold. 2000. “Peptide Electroextraction for Direct Coupling of In-Gel Digests with Capillary LC-MS/MS for Protein Identification and Sequencing.” Anal Chem 72 (17): 4115–21. Cite
Yu, G., M. Nishimura, S. Arawaka, D. Levitan, L. Zhang, A. Tandon, Y. Q. Song, et al. 2000. “Nicastrin Modulates Presenilin-Mediated Notch/Glp-1 Signal Transduction and BetaAPP Processing.” Nature 407 (6800): 48–54. Cite