Jeff Ranish Group

Dr. Jeff Ranish

PhD, Molecular and Cellular Biology Program
University of Washington

Jeff Ranish

Akiyoshi B, Nelson CR, Ranish J, Biggins S.  2009.  Analysis of Ipl1-mediated phosphorylation of the Ndc80 kinetochore protein in Saccharomyces cerevisiae. Genetics. 183:1591-5.
Kao SC, Wu H, Xie J, Chang CP, Ranish J, Graef IA, Crabtree GR.  2009.  Calcineurin/NFAT signaling is required for neuregulin-regulated Schwann cell differentiation. Science. 323:651-4.
Chaturvedi CP, Hosey AM, Palii C, Perez-Iratxeta C, Nakatani Y, Ranish J, Dilworth FJ, Brand M.  2009.  Dual role for the methyltransferase G9a in the maintenance of beta-globin gene transcription in adult erythroid cells. Proc Natl Acad Sci U S A. 106:18303-8.
Ho L, Ronan JL, Wu J, Staahl BT, Chen L, Kuo A, Lessard J, Nesvizhskii AI, Ranish J, Crabtree GR.  2009.  An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency. Proc Natl Acad Sci U S A. 106:5181-6.
Gillespie MA, Le Grand F, Scime A, Kuang S, von Maltzahn J, Seale V, Cuenda A, Ranish J, Rudnicki MA.  2009.  p38-{gamma}-dependent gene silencing restricts entry into the myogenic differentiation program. J Cell Biol. 187:991-1005.
Liu Y, Warfield L, Zhang C, Luo J, Allen J, Lang WH, Ranish J, Shokat KM, Hahn S.  2009.  Phosphorylation of the transcription elongation factor Spt5 by yeast Bur1 kinase stimulates recruitment of the PAF complex. Mol Cell Biol. 29:4852-63.
Akiyoshi B, Nelson CR, Ranish J, Biggins S.  2009.  Quantitative proteomic analysis of purified yeast kinetochores identifies a PP1 regulatory subunit. Genes Dev. 23:2887-99.
Miles GP, Samuel MA, Ranish J, Donohoe SM, Sperrazzo GM, Ellis BE.  2009.  Quantitative proteomics identifies oxidant-induced, AtMPK6-dependent changes in Arabidopsis thaliana protein profiles. Plant Signal Behav. 4:497-505.
Demers C, Chaturvedi CP, Ranish J, Juban G, Lai P, Morle F, Aebersold R, Dilworth FJ, Groudine M, Brand M.  2007.  Activator-mediated recruitment of the MLL2 methyltransferase complex to the beta-globin locus. Mol Cell. 27:573-84.
Mallick P, Schirle M, Chen SS, Flory MR, Lee H, Martin D, Ranish J, Raught B, Schmitt R, Werner T et al..  2007.  Computational prediction of proteotypic peptides for quantitative proteomics. Nat Biotechnol. 25:125-31.
Lessard J, Wu JI, Ranish J, Wan M, Winslow MM, Staahl BT, Wu H, Aebersold R, Graef IA, Crabtree GR.  2007.  An essential switch in subunit composition of a chromatin remodeling complex during neural development. Neuron. 55:201-15.
Heo K, Kim B, Kim K, Choi J, Kim H, Zhan Y, Ranish J, An W.  2007.  Isolation and characterization of proteins associated with histone H3 tails in vivo. J Biol Chem. 282:15476-83.
Choi J, Kim B, Heo K, Kim K, Kim H, Zhan Y, Ranish J, An W.  2007.  Purification and characterization of cellular proteins associated with histone H4 tails. J Biol Chem. 282:21024-31.
Sun B, Ranish J, Utleg AG, White JT, Yan X, Lin B, Hood L.  2007.  Shotgun glycopeptide capture approach coupled with mass spectrometry for comprehensive glycoproteomics. Mol Cell Proteomics. 6:141-9.
Kim B, Nesvizhskii AI, Rani PG, Hahn S, Aebersold R, Ranish J.  2007.  The transcription elongation factor TFIIS is a component of RNA polymerase II preinitiation complexes. Proc Natl Acad Sci U S A. 104:16068-73.
Ranish J, Brand M, Aebersold R.  2007.  Using stable isotope tagging and mass spectrometry to characterize protein complexes and to detect changes in their composition. Methods Mol Biol. 359:17-35.
Brand M, Ranish J, Kummer NT, Hamilton J, Igarashi K, Francastel C, Chi TH, Crabtree GR, Aebersold R, Groudine M.  2004.  Dynamic changes in transcription factor complexes during erythroid differentiation revealed by quantitative proteomics. Nat Struct Mol Biol. 11:73-80.
Ranish J, Hahn S, Lu Y, Yi EC, Li XJ, Eng J, Aebersold R.  2004.  Identification of TFB5, a new component of general transcription and DNA repair factor IIH. Nat Genet. 36:707-13.
Giglia-Mari G, Coin F, Ranish J, Hoogstraten D, Theil A, Wijgers N, Jaspers NG, Raams A, Argentini M, van der Spek PJ et al..  2004.  A new, tenth subunit of TFIIH is responsible for the DNA repair syndrome trichothiodystrophy group A. Nat Genet. 36:714-9.
Warfield L, Ranish J, Hahn S.  2004.  Positive and negative functions of the SAGA complex mediated through interaction of Spt8 with TBP and the N-terminal domain of TFIIA. Genes Dev. 18:1022-34.
Himeda CL, Ranish J, Angello JC, Maire P, Aebersold R, Hauschka SD.  2004.  Quantitative proteomic identification of six4 as the trex-binding factor in the muscle creatine kinase enhancer. Mol Cell Biol. 24:2132-43.
Ranish J, Hahn S, Lu H, Yi EC, Li XJ, Eng J, Aebersold R.  2004.  Quantitative proteomics analysis of an RNA polymerase II transcription complex identifies TFB5, a new component of general transcription factor IIH. Mol Cell Biol. 24:1709-20.
Rani PG, Ranish J, Hahn S.  2004.  RNA polymerase II (Pol II)-TFIIF and Pol II-mediator complexes: the major stable Pol II complexes and their activity in transcription initiation and reinitiation. Mol Cell Biol. 24:1709-20.