miRvestigator Framework

The miRvestigator framework is designed to take as input a list of co-expressed genes and will return the most likely miRNA regulating these genes.

Host-Pathogen Network Portal

This website serves as a portal for computational modeling program to generate an integrated, predictive gene regulatory network model of host/pathogen interactions. Investigated model systems include mouse macrophages and dendritic cells infected with pathogens Leishmania donovani (LD) and Mycobacterium tuberculosis (TB).


The practice of systems biology depends upon many software tools, operating on many kinds of data from many different sources. The Gaggle is a framework for exchanging data between independently developed software tools and databases to enable interactive exploration of systems biology data. Read more about the Gaggle.