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Viollet L, Glusman G, Murphy KJ, Newcomb TM, Reyna SP, Sweney M, Nelson B,Andermann F, Andermann E, Acsadi G et al..  2015.  Alternating Hemiplegia of Childhood: Retrospective Genetic Study and Genotype-Phenotype Correlations in 187 Subjects from the US AHCF Registry.. PLoS One. 10(5):e0127045.

He Y, Yang J, Kong D, Lin J, Xu C, Ren H, Ouyang P, Ding Y, Wang K.  2015.  Association of miR-146a rs2910164 polymorphism with cardio-cerebrovascular diseases: A systematic review and meta-analysis.. Gene. 565(2):171-9.

Liu G, Yang D, Rupaimoole R, Pecot CV, Sun Y, Mangala LS, Li X, Ji P, Cogdell D,Hu L et al..  2015.  Augmentation of Response to Chemotherapy by microRNA-506 Through Regulation of RAD51 in Serous Ovarian Cancers.. J Natl Cancer Inst. 107(7)

Keller A, Bader S.L, Shteynberg D, Hood L, Moritz RL.  2015.  Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data Independent Acquisition MS using SWATHProphet. Molecular & cellular proteomics : MCP.

von Karstedt S, Conti A, Nobis M, Montinaro A, Hartwig T, Lemke J, Legler K,Annewanter F, Campbell AD, Taraborrelli L et al..  2015.  Cancer cell-autonomous TRAIL-R signaling promotes KRAS-driven cancer progression, invasion, and metastasis..Cancer Cell. 27(4):561-73.

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Turkarslan S, Peterson EJR, Rustad TR, Minch KJ, Reiss DJ, Morrison R, Ma S,Price ND, Sherman DR, Baliga NS.  2015.  A comprehensive map of genome-wide gene regulation in Mycobacterium tuberculosis.. Sci Data. 2:150010.

Hu T, Li X, Zhang Q, Huang K, Jia Y, Yang R, Tang F, Tian Q, Ma D, Li S.  2015.  Could the extent of lymphadenectomy be modified by neoadjuvant chemotherapy in cervical cancer? A large-scale retrospective study. PLoS One. 10(4):e0123539.

Imam S, Schäuble S, Brooks AN, Baliga NS, Price ND.  2015.  Data-driven integration of genome-scale regulatory and metabolic network models.. Front Microbiol. 6:409.

Deutsch EW, Albar JP, Binz PA, Eisenacher M, Jones AR, Mayer G, Omenn GS,Orchard S, Vizcaino JA, Hermjakob H.  2015.  Development of data representation standards by the human proteome organization proteomics standards initiative. Journal of the American Medical Informatics Association : JAMIA.

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He Y, Chevillet JR, Liu G, Kim TK, Wang K.  2015.  The effects of microRNA on the absorption, distribution, metabolism and excretion of drugs.. Br J Pharmacol. 172(11):2733-47.

Zhu X, Yuan R., Hood L, Ao P.  2015.  Endogenous molecular-cellular hierarchical modeling of prostate carcinogenesis uncovers robust structure. Progress in biophysics and molecular biology. 117:30-42.

Eddy JA, Funk CC, Price ND.  2015.  Fostering synergy between cell biology and systems biology.. Trends Cell Biol.

He Y, Zeng K., Zhang X., Chen Q., Wu J, Li H, Zhou Y, Glusman G, Roach J,Etheridge A et al..  2015.  A Gain-of-Function Mutation in TRPV3 Causes Focal Palmoplantar Keratoderma in a Chinese Family. The Journal of investigative dermatology. 135:907-9.

Simeonidis E, Price ND.  2015.  Genome-scale modeling for metabolic engineering.Journal of industrial microbiology & biotechnology. 42:327-38.

Turner K.M, Sun Y, Ji P, Granberg K.J, Bernard B, Hu L, Cogdell D.E, Zhou X.,Yli-Harja O, Nykter M et al..  2015.  Genomically amplified Akt3 activates DNA repair pathway and promotes glioma progression. Proceedings of the National Academy of Sciences of the United States of America. 112:3421-6.

Lee HJ, Kim J.M, Kim K.H, Heo J.I, Kwak S.J, Han J.A.  2015.  Genotoxic stress/p53-induced DNAJB9 inhibits the pro-apoptotic function of p53. Cell death and differentiation. 22:86-95.

Lin B, Lee H, Yoon JG, Madan A, Wayner E., Tonning S., Hothi P., Schroeder B.,Ulasov I., Foltz G et al..  2015.  Global analysis of H3K4me3 and H3K27me3 profiles in glioblastoma stem cells and identification of SLC17A7 as a bivalent tumor suppressor gene.Oncotarget.

Glusman G, Severson A., Dhankani V., Robinson M, Farrah T, Mauldin DE,Stittrich A.B, Ament SA, Roach JC, Brunkow M.E et al..  2015.  Identification of copy number variants in whole-genome data using Reference Coverage Profiles. Frontiers in genetics. 6:45.

Chakrabarty P., Li A., Ceballos-Diaz C., Eddy JA, Funk C.C, Moore B., DiNunno N., Rosario A.M, Cruz P.E, Verbeeck C. et al..  2015.  IL-10 Alters Immunoproteostasis in APP Mice, Increasing Plaque Burden and Worsening Cognitive Behavior. Neuron. 85:519-33.

Hood L, Lovejoy J.C, Price ND.  2015.  Integrating big data and actionable health coaching to optimize wellness. BMC medicine. 13:4.

Basler G., Simeonidis E.  2015.  Integrating food webs with metabolic networks: modeling contaminant degradation in marine ecosystems. Frontiers in genetics. 6:20.

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Elbelt U., Trovato A., Kloth M., Gentz E., Finke R., Spranger J., Galas D, Weber S., Wolf C., Konig K. et al..  2015.  Molecular and clinical evidence for an ARMC5 tumor syndrome: concurrent inactivating germline and somatic mutations are associated with both primary macronodular adrenal hyperplasia and meningioma. The Journal of clinical endocrinology and metabolism. 100:E119-28.

Lee M-J, Chen Y-F, Fan P-C, Wang K-C, Wang K, Wang J, Kuo M-F.  2015.  Mutation genotypes of RNF213 gene from moyamoya patients in Taiwan.. J Neurol Sci. 353(1-2):161-5.

Subramanian N., Torabi-Parizi P., Gottschalk R.A, Germain R.N, Dutta B..  2015.  Network representations of immune system complexity. Wiley interdisciplinary reviews. Systems biology and medicine. 7:13-38.

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Cheng Z, Wang Z, Gillespie DE, Lausted C, Zheng Z, Yang M, Zhu J.  2015.  Plain silver surface plasmon resonance for microarray application.. Anal Chem. 87(3):1466-9.

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Ament SA, Szelinger S., Glusman G, Ashworth J, Hou L., Akula N., Shekhtman T., Badner J.A, Brunkow M.E, Mauldin DE et al..  2015.  Rare variants in neuronal excitability genes influence risk for bipolar disorder. Proceedings of the National Academy of Sciences of the United States of America. 112:3576-81.

Hardies K, May P, Djémié T, Tarta-Arsene O, Deconinck T, Craiu D, Helbig I,Suls A, Balling R, Weckhuysen S et al..  2015.  Recessive loss-of-function mutations in AP4S1 cause mild fever-sensitive seizures, developmental delay and spastic paraplegia through loss of AP-4 complex assembly.. Hum Mol Genet. 24(8):2218-27.

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Craig TA, Zhang Y, Magis AT, Funk CC, Price ND, Ekker SC, Kumar, iv R. 2014. Detection of 1,25-Dihydroxyvitamin D-Regulated miRNAs in Zebrafish by Whole Transcriptome Sequencing.. Zebrafish.

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Labhsetwar P, Cole J, Price N, Luthey-Schulten Z. 2014. Elucidating Metabolic Variability in Isogenic Microbial Populations Arising due to Noise in Protein Expression. Biophysical Journal. 106:644a.

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Chiang J-H, Cheng W-S, Hood L, Tian Q. 2014. An Epigenetic Biomarker Panel for Glioblastoma Multiforme Personalized Medicine through DNA Methylation Analysis of Human Embryonic Stem Cell-like Signature. Omics: a journal of integrative biology.

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Brownstein CA, Beggs AH, Homer N, Merriman B, Yu TW, Flannery KC, DeChene ET, Towne MC, Savage SK, Price EN et al.. 2014. An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge.. Genome Biol. 15(3):R53.

Ekici S, Turkarslan S, Pawlik G, Dancis A, Baliga NS, Koch H-G, Daldal F. 2014. Intracytoplasmic Copper Homeostasis Controls Cytochrome c Oxidase Production. mBio. 5:e01055-13.

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Benedict MN, Henriksen J.R, Metcalf WW, Whitaker R.J, Price ND. 2014. ITEP: An integrated toolkit for exploration of microbial pan-genomes. BMC genomics. 15:8.

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Rustad TR, Minch KJ, Ma S, Winkler JK, Hobbs S, Hickey M, Brabant W, Turkarslan S, Price ND, Baliga NS et al.. 2014. Mapping and manipulating the Mycobacterium tuberculosis transcriptome using a transcription factor overexpression-derived regulatory network.. Genome Biol. 15(11):502.

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Cho JH, Lee I, Hammamieh R., Wang K, Baxter D, Scherler K., Etheridge A, Kulchenko A., Gautam A., Muhie S. et al.. 2014. Molecular evidence of stress-induced acute heart injury in a mouse model simulating posttraumatic stress disorder. Proceedings of the National Academy of Sciences of the United States of America. 111:3188-93.

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