jTraML: An Open Source Java API for TraML, the PSI Standard for Sharing SRM Transitions

TitlejTraML: An Open Source Java API for TraML, the PSI Standard for Sharing SRM Transitions
Publication TypeJournal Article
Year of Publication2011
AuthorsHelsens K, Brusniak MY, Deutsch E, Moritz RL, Martens L
JournalJournal of proteome research
Date PublishedOct 13
PMID21967198
AbstractWe here present jTraML, a Java API for the Proteomics Standards Initiative TraML data standard. The library provides fully functional classes for all elements specified in the TraML XSD document, as well as convenient methods to construct controlled vocabulary-based instances required to define SRM transitions. The use of jTraML is demonstrated via a two-way conversion tool between TraML documents and vendor specific files, facilitating the adoption process of this new community standard. The library is released as open source under the permissive Apache2 license and can be downloaded from http://jtraml.googlecode.com . TraML files can also be converted online at http://iomics.ugent.be/jtraml .
Short TitleJ Proteome ResJ Proteome Res
Alternate JournalJ Proteome Res

Back