| Title | BioNetBuilder: automatic integration of biological networks |
| Publication Type | Journal Article |
| Year of Publication | 2007 |
| Authors | Avila-Campillo I, Drew K, Lin J, Reiss DJ, Bonneau R |
| Journal | Bioinformatics |
| Volume | 23 |
| Pagination | 392-3 |
| Date Published | Feb 1 |
| PMID | 17138585 |
| Keywords | *Algorithms, *Models, Biological, *Software, *User-Computer Interface, Computer Graphics, Computer Simulation, Database Management Systems, Information Storage and Retrieval/methods, Internet, Proteome/*metabolism, Signal Transduction/*physiology, Systems Integration |
| Abstract | BioNetBuilder is an open-source client-server Cytoscape plugin that offers a user-friendly interface to create biological networks integrated from several databases. Users can create networks for approximately 1500 organisms, including common model organisms and human. Currently supported databases include: DIP, BIND, Prolinks, KEGG, HPRD, The BioGrid and GO, among others. The BioNetBuilder plugin client is available as a Java Webstart, providing a platform-independent network interface to these public databases. Availability: http://err.bio.nyu.edu/cytoscape/bionetbuilder/ |
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