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Eric Deutsch
Area of Expertise
Database design
Proteomics
Current Position
Senior Database Designer
Degree
Ph.D., Astrophysics, University of Washington, 1998
Research Interests
Dr. Deutsch's research activities include software development for organization and integration of data for systems biology research. He is the lead designer for the Systems Biology Experiment Analysis Management System (SBEAMS). He contributes the development of minimum information standards, data formats, and databases for microarray, proteomic, and other types of functional genomics experiments. Dr. Deutsch is the leader of the PeptideAtlas Project, which aims to collect proteomic mass spectrometry data from labs around the world to synthesize a master list of observed peptides and proteins and disseminate the results back to the community.
Selected Publications
Deutsch, E. W., Lam H., Aebersold R., PeptideAtlas: A Resource for Target Selection for Emerging Targeted Proteomics Workflows, 2008, EMBO Reports, 9, 429
[ Abstract | Free Full Access PDF ]
Deutsch, E. W., Lam, H., Aebersold R., Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics, 2008, Physiological Genomics, 33, 18
[ Abstract | Free Full Access ]
Deutsch, E. W., Ball, C. A., Berman, J. J., Bova, G.S., Brazma, A., Bumgarner, R. E., Campbell, D. A., Causton, H. C., Christiansen, J., Davidson, D., et al., Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE), 2008, Nature Biotechnology, 26, 305
[ Abstract | PDF ]
Brunner, E., Ahrens, C. H., Mohanty, S., Baetschmann, H., Loevenich, S., Potthast, F., Deutsch, E. W., deLichtenberg, U., Rinner, O., Lee, H., et al., A high-quality map of the Drosophila melanogaster proteome, 2007, Nature Biotechnology, 25, 576-583
Lam H., Deutsch, E. W., Eddes J.S., Eng J.K., King N., Stein S.E., Aebersold R., Development and validation of a spectral library searching method for peptide identification from MS/MS, 2007, Proteomics, 7(5), 655-667
Relevant Links
http://www.peptideatlas.org/
http://www.sbeams.org/
Personal Web Page
http://db.systemsbiology.net/users/edeutsch/
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